Solyc09g010070.1.1 (Solyc09g010070.1)


Aliases : Solyc09g010070.1

Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein embryo defective 2758 (EMB2758)


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc09g010070.1.1
Cluster HCCA cluster: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
AT1G06140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 Gene family
AT1G17630 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.06 Gene family
AT1G56570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Gene family
AT1G69350 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT2G27610 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
AT2G39620 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Gene family
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Gene family
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT3G11460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
AT3G13880 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT3G15930 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Gene family
AT3G26782 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT4G13650 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
AT4G14170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Gene family
AT4G15720 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Gene family
AT4G21065 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Gene family
AT4G35130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Gene family
AT4G39952 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
AT5G19020 MEF18 mitochondrial editing factor 18 0.06 Gene family
AT5G27110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT5G47460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
AT5G52850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Gene family
GSVIVT01000086001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
GSVIVT01007645001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01009407001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
GSVIVT01010654001 No alias No description available 0.03 Gene family
GSVIVT01011501001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01011735001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
GSVIVT01015087001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01015233001 No alias No description available 0.04 Gene family
GSVIVT01015325001 No alias No description available 0.03 Gene family
GSVIVT01015466001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
GSVIVT01016860001 No alias No description available 0.04 Gene family
GSVIVT01017075001 No alias No description available 0.05 Gene family
GSVIVT01017378001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
GSVIVT01018597001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01019408001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.11 Gene family
GSVIVT01021246001 No alias No description available 0.02 Gene family
GSVIVT01022230001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01023860001 No alias No description available 0.06 Gene family
GSVIVT01024493001 No alias No description available 0.02 Gene family
GSVIVT01024870001 No alias No description available 0.03 Gene family
GSVIVT01024912001 No alias No description available 0.02 Gene family
GSVIVT01026025001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01026881001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
GSVIVT01027504001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01029382001 No alias 35.1.27 not assigned.no ontology.tetratricopeptide... 0.02 Gene family
GSVIVT01030054001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.08 Gene family
GSVIVT01031265001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
GSVIVT01032394001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01032994001 No alias No description available 0.04 Gene family
GSVIVT01033004001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
GSVIVT01033304001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01033389001 No alias No description available 0.04 Gene family
GSVIVT01033837001 No alias No description available 0.03 Gene family
GSVIVT01035618001 No alias No description available 0.03 Gene family
GSVIVT01035837001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01035920001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
GSVIVT01036169001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01036511001 No alias No description available 0.03 Gene family
GSVIVT01036943001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01037332001 No alias No description available 0.02 Gene family
GSVIVT01037562001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os01g72930 Os01g0959600 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
LOC_Os01g74600 Os01g0977400 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os02g18810 Os02g0290000 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os06g02200 Os06g0112000 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os07g05560 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os07g20420 Os07g0299800 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os08g25280 Os08g0340900 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os08g33700 Os08g0434000 No description available 0.03 Gene family
LOC_Os11g14980 Os11g0256100 No description available 0.03 Gene family
MA_10427342g0010 No alias No description available 0.03 Gene family
MA_10429043g0020 No alias No description available 0.02 Gene family
MA_107356g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_121267g0010 No alias No description available 0.04 Gene family
MA_14659g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_14938g0010 No alias No description available 0.02 Gene family
MA_18165g0010 No alias No description available 0.02 Gene family
MA_252238g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_25584g0010 No alias No description available 0.03 Gene family
MA_27147g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_2991g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_3317g0020 No alias No description available 0.03 Gene family
MA_39595g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
MA_50118g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_56714g0010 No alias No description available 0.02 Gene family
MA_59148g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_61422g0020 No alias No description available 0.02 Gene family
MA_65500g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_656915g0010 No alias No description available 0.03 Gene family
MA_683665g0010 No alias No description available 0.03 Gene family
MA_745151g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_77437g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_778985g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_81436g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_86894g0010 No alias No description available 0.02 Gene family
MA_97789g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Smo399 PACid_15419376 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Smo83339 PACid_15413429 No description available 0.02 Gene family
Smo90563 PACid_15413443 No description available 0.02 Gene family
Solyc02g093380.1.1 Solyc02g093380.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Solyc03g082830.2.1 Solyc03g082830.2 No description available 0.03 Gene family
Solyc09g059580.2.1 Solyc09g059580.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d005149 GRMZM2G138303 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d013941 GRMZM2G073017 No description available 0.05 Gene family
Zm00001d017518 GRMZM2G014977 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Zm00001d020825 GRMZM5G851929 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d022224 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.1 Gene family
Zm00001d025463 GRMZM2G341216 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
Zm00001d025656 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d027555 GRMZM2G176523 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d028587 GRMZM5G836424 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d030143 GRMZM2G430710 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d031535 GRMZM2G076257 No description available 0.02 Gene family
Zm00001d037254 GRMZM2G060337 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d037891 No alias No description available 0.05 Gene family
Zm00001d042039 GRMZM2G060536 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d042067 GRMZM2G099875 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d043081 GRMZM2G350410 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d050938 GRMZM2G163396 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Zm00001d051816 GRMZM2G029859 No description available 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 214 262
IPR002885 Pentatricopeptide_repeat 314 362
IPR032867 DYW_dom 488 612
IPR002885 Pentatricopeptide_repeat 390 413
IPR002885 Pentatricopeptide_repeat 115 145
No external refs found!