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  5. Azfi_s0435.g069919

Azfi_s0435.g069919 (CAF2, ATCAF2)


Aliases : CAF2, ATCAF2

Description : component *(CAF) of CRS2-CAF plastidial RNA splicing factor complexes & original description: CDS=1-2967


Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0435.g069919

Target Alias Description ECC score Gene Family Method Actions
Ala_g19873 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Aob_g07417 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Aspi01Gene60098.t1 ATCAF1, CAF1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60099.t1 ATCAF1, CAF1,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene65743.t1 CAF2, ATCAF2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06914 CAF2, ATCAF2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g20587 ATCAF1, CAF1 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.04 OrthoFinder output from all 47 species
Ehy_g19169 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g08762 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.06 OrthoFinder output from all 47 species
Mp8g01840.1 CAF2, ATCAF2 CRS2-associated factor 1, chloroplastic OS=Zea mays... 0.03 OrthoFinder output from all 47 species
Sam_g51074 No alias component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Smo62891 CAF2, ATCAF2 RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
Tin_g12704 ATCAF1, CAF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g31737 ATCAF1, CAF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 494 577
IPR001890 RNA-binding_CRM 612 695
No external refs found!