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  5. Azfi_s0409.g068486

Azfi_s0409.g068486 (ATRABA4C, RABA4C, SMG1)


Aliases : ATRABA4C, RABA4C, SMG1

Description : A-class RAB GTPase & original description: CDS=114-785


Gene families : OG0001718 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001718_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0409.g068486
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AT1G01200 RABA3, ATRAB-A3, ATRABA3 RAB GTPase homolog A3 0.02 OrthoFinder output from all 47 species
Als_g08712 RABA4D, ATRABA4D A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g14412 RABA4D, ATRABA4D A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g16795 RABA4D, ATRABA4D A-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.16G048100.1 RABA4D,... A-class RAB GTPase & original description:... 0.04 OrthoFinder output from all 47 species
Dde_g04709 RABA4D, ATRABA4D A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01003415001 AtRABA4a, RABA4a Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
GSVIVT01033357001 RABA4D, ATRABA4D Vesicle trafficking.regulation of membrane tethering and... 0.01 OrthoFinder output from all 47 species
Gb_23200 ATRABA4C, RABA4C, SMG1 A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Lfl_g28692 RABA4D, ATRABA4D A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
MA_10428137g0010 AtRABA4a, RABA4a A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
MA_59492g0010 RABA4D, ATRABA4D A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Nbi_g06105 RABA4D, ATRABA4D A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04349 RABA4D, ATRABA4D A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g38230 RABA4D, ATRABA4D A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004107 chorismate synthase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 59 219
No external refs found!