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Aliases : VAC1, ECB2, ATECB2
Description : not classified & original description: CDS=1-2013
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Azfi_s0371.g067098 | |
| Cluster | HCCA: Cluster_6 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00587p00011650 | evm_27.TU.AmTr_v1... | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g003790 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g005663 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g044762 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g087678 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g108175 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g07273 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g24714 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g27794 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g35872 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g38002 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g07022 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g12718 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g18066 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g18769 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g19310 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g26537 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g30199 | REME1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g30906 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g32098 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g54765 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g54948 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g02020 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g28532 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene10286.t1 | Aspi01Gene10286 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene18385.t1 | OTP82, Aspi01Gene18385 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene34740.t1 | Aspi01Gene34740 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene36455.t1 | CRR21, Aspi01Gene36455 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0001.g000621 | No alias | ssDNA-binding protein *(OSB) & original description: CDS=97-654 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0049.g030697 | No alias | not classified & original description: CDS=1-2361 | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g13627 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g19896 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g20185 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Cba_g29871 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g34897 | REME1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.03G039400.1 | Ceric.03G039400 | not classified & original description: pacid=50571919... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.04G109500.1 | Ceric.04G109500 | not classified & original description: pacid=50632099... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.16G024400.1 | Ceric.16G024400 | not classified & original description: pacid=50589838... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.23G038700.1 | Ceric.23G038700 | not classified & original description: pacid=50609782... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.29G060200.1 | Ceric.29G060200 | not classified & original description: pacid=50624987... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.34G063100.1 | Ceric.34G063100 | not classified & original description: pacid=50623551... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.36G048700.1 | Ceric.36G048700 | not classified & original description: pacid=50569051... | 0.05 | OrthoFinder output from all 47 species | |
| Dac_g22189 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g30064 | CRR22 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g31026 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g34941 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dac_g46003 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g09653 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g14666 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g21350 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g38682 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g45948 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g31029 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g00984 | OSB3 | cofactor of plastid-encoded RNA polymerase *(TAC9) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g12271 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g14704 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g01393 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Len_g07790 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g26579 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g04822 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g07796 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g19289 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g36302 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g18814 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g23175 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g25714 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g28538 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g43591 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g23872 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g41304 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g05953 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g12523 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g20232 | OTP84 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g32193 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g09492 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g29785 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g31236 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g53728 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g56822 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g59333 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g08389 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g17518 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g29713 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g39881 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g48011 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Smo83339 | CRR22 | Pentatricopeptide repeat-containing protein At3g12770... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc03g115800.1.1 | Solyc03g115800 | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g06017 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g23577 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g53542 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g08446 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g23118 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 35 | 83 |
| IPR002885 | Pentatricopeptide_repeat | 136 | 182 |
| IPR002885 | Pentatricopeptide_repeat | 438 | 485 |
| IPR002885 | Pentatricopeptide_repeat | 513 | 533 |
| IPR002885 | Pentatricopeptide_repeat | 239 | 269 |
| IPR002885 | Pentatricopeptide_repeat | 340 | 370 |
| IPR002885 | Pentatricopeptide_repeat | 312 | 338 |
| IPR002885 | Pentatricopeptide_repeat | 110 | 130 |
| IPR002885 | Pentatricopeptide_repeat | 211 | 233 |
| IPR046848 | E_motif | 556 | 618 |
| No external refs found! |