1. Home
  2. Species
  3. Azolla filiculoides
  4. Sequence
  5. Azfi_s0309.g064107

Azfi_s0309.g064107 (XRCC4)


Aliases : XRCC4

Description : component *(XRCC4) of LIG4-XRCC4 ligase complex & original description: CDS=48-1109


Gene families : OG0004816 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004816_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0309.g064107
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Azfi_s2974.g113916 XRCC4 component *(XRCC4) of LIG4-XRCC4 ligase complex &... 0.18 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006302 double-strand break repair IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR010585 DNA_repair_prot_XRCC4 154 285
No external refs found!