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  5. Azfi_s0287.g063161

Azfi_s0287.g063161


Description : component *(UPF2) of RNA quality control Exon Junction complex & original description: CDS=223-3849


Gene families : OG0003692 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003692_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Azfi_s0287.g063161

Target Alias Description ECC score Gene Family Method Actions
AT2G39260 No alias binding;RNA binding 0.03 OrthoFinder output from all 47 species
Ala_g20588 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022080.18 No alias Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01016353001 No alias RNA processing.RNA quality control Exon Junction complex... 0.05 OrthoFinder output from all 47 species
Gb_41555 No alias component UPF2 of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
LOC_Os02g42040.1 LOC_Os02g42040 component UPF2 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Len_g19045 No alias component *(UPF2) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Nbi_g09684 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ore_g06800 No alias component *(UPF2) of RNA quality control Exon Junction... 0.06 OrthoFinder output from all 47 species
Sam_g36558 No alias component *(UPF2) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Smo440923 No alias RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder output from all 47 species
Solyc04g049770.4.1 Solyc04g049770 component UPF2 of RNA quality control Exon Junction complex 0.07 OrthoFinder output from all 47 species
Spa_g12526 No alias component *(UPF2) of RNA quality control Exon Junction... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016409 palmitoyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR003890 MIF4G-like_typ-3 687 880
IPR007193 Upf2/Nmd2_C 1016 1152
No external refs found!