Azfi_s0285.g063130

Description : regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway & original description: CDS=1-1965

Gene families : OG0005389 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005389_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0285.g063130
Cluster	HCCA: Cluster_19

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000441.11	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.01	OrthoFinder output from all 47 species
Cre07.g314900	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species
GSVIVT01008218001	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
LOC_Os03g58810.1	LOC_Os03g58810	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species
Mp7g12890.1	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Smo230685	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Zm00001e011842_P001	Zm00001e011842	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003678	DNA helicase activity	IEP	HCCA
BP	GO:0006771	riboflavin metabolic process	IEP	HCCA
MF	GO:0008703	5-amino-6-(5-phosphoribosylamino)uracil reductase activity	IEP	HCCA
BP	GO:0009231	riboflavin biosynthetic process	IEP	HCCA
BP	GO:0042726	flavin-containing compound metabolic process	IEP	HCCA
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	HCCA
MF	GO:0043138	3'-5' DNA helicase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	186	351
IPR025313	DUF4217	538	598
IPR001650	Helicase_C	393	496

External Links

No external refs found!