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  5. Azfi_s0274.g061363

Azfi_s0274.g061363


Description : E3 ubiquitin ligase *(RMA/MUSE) & original description: CDS=1-2115


Gene families : OG0000266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000266_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0274.g061363

Target Alias Description ECC score Gene Family Method Actions
Ala_g24081 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g70135 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.39G049500.1 Ceric.39G049500 E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.05 OrthoFinder output from all 47 species
Dac_g40137 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g48203 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g44544 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g62388 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g065540.3.1 Solyc02g065540 RING-HC-class E3 ligase 0.05 OrthoFinder output from all 47 species
Solyc02g089870.3.1 Solyc02g089870 RING-HC-class E3 ligase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 102 142
No external refs found!