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  5. Azfi_s0262.g060841

Azfi_s0262.g060841


Description : not classified & original description: CDS=82-2085


Gene families : OG0004930 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004930_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0262.g060841
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AT4G16390 SVR7 pentatricopeptide (PPR) repeat-containing protein 0.03 OrthoFinder output from all 47 species
AT5G46580 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g059010 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01055 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.15G014300.1 Ceric.15G014300 not classified & original description: pacid=50639905... 0.03 OrthoFinder output from all 47 species
Ehy_g01446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01003496001 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.03 OrthoFinder output from all 47 species
Gb_17291 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.04 OrthoFinder output from all 47 species
Gb_19282 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.04 OrthoFinder output from all 47 species
LOC_Os03g11670.1 SVR7, LOC_Os03g11670 Pentatricopeptide repeat-containing protein ATP4... 0.04 OrthoFinder output from all 47 species
Len_g02383 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp1g08510.1 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.02 OrthoFinder output from all 47 species
Sam_g11215 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g012670.1.1 SVR7, Solyc11g012670 Pentatricopeptide repeat-containing protein At4g16390,... 0.03 OrthoFinder output from all 47 species
Zm00001e006409_P001 Zm00001e006409 Pentatricopeptide repeat-containing protein At5g46580,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0042586 peptide deformylase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 419 446
IPR002885 Pentatricopeptide_repeat 346 373
IPR002885 Pentatricopeptide_repeat 241 271
IPR002885 Pentatricopeptide_repeat 383 411
IPR002885 Pentatricopeptide_repeat 157 217
IPR002885 Pentatricopeptide_repeat 273 322
No external refs found!