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  5. Azfi_s0257.g060601

Azfi_s0257.g060601


Description : not classified & original description: CDS=200-3178


Gene families : OG0004721 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004721_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0257.g060601

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00242110 evm_27.TU.AmTr_v1... ATP-dependent DNA helicase At3g02060, chloroplastic... 0.03 OrthoFinder output from all 47 species
AT3G02060 No alias DEAD/DEAH box helicase, putative 0.03 OrthoFinder output from all 47 species
Aev_g07951 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g17279 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g28280 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.13G022800.1 Ceric.13G022800 not classified & original description: pacid=50636376... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021357.51 No alias ATP-dependent DNA helicase At3g02060, chloroplastic... 0.02 OrthoFinder output from all 47 species
Dac_g42486 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04918 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01032955001 No alias ATP-dependent DNA helicase At3g02060, chloroplastic... 0.03 OrthoFinder output from all 47 species
LOC_Os11g32880.1 LOC_Os11g32880 ATP-dependent DNA helicase At3g02060, chloroplastic... 0.03 OrthoFinder output from all 47 species
Len_g28141 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Mp2g07230.1 No alias ATP-dependent DNA helicase At3g02060, chloroplastic... 0.03 OrthoFinder output from all 47 species
Ore_g30043 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g42734 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Smo77276 No alias ATP-dependent DNA helicase At3g02060, chloroplastic... 0.04 OrthoFinder output from all 47 species
Spa_g26930 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e011170_P004 Zm00001e011170 ATP-dependent DNA helicase At3g02060, chloroplastic... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 646 745
IPR011545 DEAD/DEAH_box_helicase_dom 441 598
IPR003711 CarD-like/TRCF_RID 315 410
No external refs found!