- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : ribosome biogenesis factor *(CRASS) & original description: CDS=1-534
Gene families : OG0007938 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007938_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Azfi_s0250.g060247 | |
| Cluster | HCCA: Cluster_74 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G14910 | No alias | Heavy metal transport/detoxification superfamily protein | 0.13 | OrthoFinder output from all 47 species | |
| Adi_g112181 | No alias | ribosome biogenesis factor *(CRASS) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g02821 | No alias | ribosome biogenesis factor *(CRASS) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g13367 | No alias | ribosome biogenesis factor *(CRASS) & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Aob_g04787 | No alias | ribosome biogenesis factor *(CRASS) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g06536 | No alias | ribosome biogenesis factor *(CRASS) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.01G033000.1 | Ceric.01G033000 | ribosome biogenesis factor *(CRASS) & original... | 0.09 | OrthoFinder output from all 47 species | |
| Dac_g12212 | No alias | ribosome biogenesis factor *(CRASS) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g36209 | No alias | ribosome biogenesis factor *(CRASS) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Dde_g11519 | No alias | ribosome biogenesis factor *(CRASS) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ehy_g04247 | No alias | ribosome biogenesis factor *(CRASS) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g05290 | No alias | ribosome biogenesis factor *(CRASS) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01032527001 | No alias | No description available | 0.1 | OrthoFinder output from all 47 species | |
| Gb_22864 | No alias | no hits & (original description: none) | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os05g27100.1 | LOC_Os05g27100 | ribosome biogenesis factor (CRASS) | 0.1 | OrthoFinder output from all 47 species | |
| Len_g14822 | No alias | ribosome biogenesis factor *(CRASS) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g37391 | No alias | ribosome biogenesis factor *(CRASS) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| MA_59576g0010 | No alias | ribosome biogenesis factor (CRASS) | 0.06 | OrthoFinder output from all 47 species | |
| Mp6g04290.1 | No alias | ribosome biogenesis factor (CRASS) | 0.15 | OrthoFinder output from all 47 species | |
| Msp_g44058 | No alias | ribosome biogenesis factor *(CRASS) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g44614 | No alias | ribosome biogenesis factor *(CRASS) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pnu_g07087 | No alias | ribosome biogenesis factor *(CRASS) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c1_25290V3.1 | Pp3c1_25290 | Heavy metal transport/detoxification superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g00577 | No alias | ribosome biogenesis factor *(CRASS) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0180.g024792 | No alias | ribosome biogenesis factor *(CRASS) & original... | 0.08 | OrthoFinder output from all 47 species | |
| Sam_g13302 | No alias | ribosome biogenesis factor *(CRASS) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g13303 | No alias | ribosome biogenesis factor *(CRASS) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc02g087150.3.1 | Solyc02g087150 | ribosome biogenesis factor (CRASS) | 0.11 | OrthoFinder output from all 47 species | |
| Spa_g10440 | No alias | ribosome biogenesis factor *(CRASS) & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Zm00001e031534_P001 | Zm00001e031534 | ribosome biogenesis factor (CRASS) | 0.09 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0003746 | translation elongation factor activity | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| BP | GO:0006414 | translational elongation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0006771 | riboflavin metabolic process | IEP | HCCA |
| MF | GO:0008686 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009231 | riboflavin biosynthetic process | IEP | HCCA |
| MF | GO:0016651 | oxidoreductase activity, acting on NAD(P)H | IEP | HCCA |
| MF | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0042726 | flavin-containing compound metabolic process | IEP | HCCA |
| BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |