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  5. Azfi_s0242.g059782

Azfi_s0242.g059782 (EMB2261)


Aliases : EMB2261

Description : AS2/LOB-type transcription factor & original description: CDS=1-1254


Gene families : OG0000114 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0242.g059782
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Adi_g052431 LBD4 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g10153 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0072.g036906 LBD15, ASL11 AS2/LOB-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ehy_g02061 AS2 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016326001 LBD11 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.01 OrthoFinder output from all 47 species
Lfl_g37300 LBD4 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_290245g0010 AS2 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
MA_9412105g0010 LBD15, ASL11 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Solyc02g090410.4.1 ASL1, LBD36,... transcription factor (AS2/LOB) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0010274 hydrotropism IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
InterPro domains Description Start Stop
IPR004883 LOB 121 219
IPR002885 Pentatricopeptide_repeat 9 34
IPR002885 Pentatricopeptide_repeat 110 128
IPR002885 Pentatricopeptide_repeat 36 83
No external refs found!