Description : RNA helicase Prp43 of Intron-Lariat Spliceosome complex & original description: CDS=264-2405
Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Azfi_s0237.g059557 | |
Cluster | HCCA: Cluster_89 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT2G35340 | MEE29 | helicase domain-containing protein | 0.03 | OrthoFinder output from all 47 species | |
Adi_g107993 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aob_g19131 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g24091 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g33796 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.03 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00021589.29 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.01 | OrthoFinder output from all 47 species | |
Dde_g48013 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01010362001 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | OrthoFinder output from all 47 species | |
Len_g57131 | EMB3011 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Msp_g10425 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.05 | OrthoFinder output from all 47 species | |
Msp_g13247 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Pir_g15013 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pnu_g17507 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pp3s62_10V3.1 | Pp3s62_10 | RNA helicase family protein | 0.02 | OrthoFinder output from all 47 species | |
Sam_g03727 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g25079 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Sam_g48742 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.03 | OrthoFinder output from all 47 species | |
Solyc01g079250.3.1 | Solyc01g079250 | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0004386 | helicase activity | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
MF | GO:0003839 | gamma-glutamylcyclotransferase activity | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006413 | translational initiation | IEP | HCCA |
BP | GO:0006575 | cellular modified amino acid metabolic process | IEP | HCCA |
BP | GO:0006749 | glutathione metabolic process | IEP | HCCA |
BP | GO:0006751 | glutathione catabolic process | IEP | HCCA |
BP | GO:0006790 | sulfur compound metabolic process | IEP | HCCA |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
MF | GO:0016840 | carbon-nitrogen lyase activity | IEP | HCCA |
MF | GO:0016842 | amidine-lyase activity | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0042219 | cellular modified amino acid catabolic process | IEP | HCCA |
BP | GO:0043171 | peptide catabolic process | IEP | HCCA |
BP | GO:0044273 | sulfur compound catabolic process | IEP | HCCA |
MF | GO:0045182 | translation regulator activity | IEP | HCCA |
MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
BP | GO:1901565 | organonitrogen compound catabolic process | IEP | HCCA |
No external refs found! |