Azfi_s0208.g058017


Description : not classified & original description: CDS=1-834


Gene families : OG0000676 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000676_tree

Sequence : coding (download), protein (download) ECC Pair graph </p> </div> <h3 class="banner-blue" id="expression_profile">Expression Profile</h3> <div class="pull-right"> <a href="#" class="btn btn-default" id="enable_pan" data-toggle="tooltip" title="Toggle Pan"><i class="fa fa-arrows" aria-hidden="true"></i></a> <a href="#" class="btn btn-default" id="enable_zoom" data-toggle="tooltip" title="Toggle zoom"><i class="fa fa-search" aria-hidden="true"></i></a> </div> <div style="height:550px; max-height:550px; margin-top:30px"> <canvas id="expression-profile" class="center-block" height="550"/> </div> <br> <div class="pull-right"> <a href="/profile/download/plot/2379692" class="btn btn-primary" download="plot_2379692.txt">Download</a> </div> <p><strong>Note:</strong>Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available <a href="/profile/view/2379692">here</a>.</p> <br> <div> <h3 class="banner-blue" id="coexpression_networks">Co-expression Networks</h3> <div class="table-responsive"> <table class="table table-striped table-separated" id="coexpression_table"> <thead> <tr> <th data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th>Actions</th> </tr> </thead> <tbody> <tr> <td><abbr title="Click to show help" href="/help/neighborhood" data-target="#helpModal">Neighborhood</abbr></td> <td>HRR: <strong>Azfi_s0208.g058017</strong></td> <td><a href="/network/download/neighbors/2824066" data-toggle="tooltip" data-placement="top" title="Download direct neighbors" download="neighbors_2824066.txt"><i class="fa fa-list"></i></span> <a href="/network/graph/2824066" data-toggle="tooltip" data-placement="top" title="View neighborhood as graph"><i class="fa fa-sitemap"></i></a> <span class="text-muted" data-toggle="tooltip" data-placement="top" title="Disabled for neighborhoods"><i class="fa fa-area-chart"></i></span> <span class="text-muted" data-toggle="tooltip" data-placement="top" title="Disabled for neighborhoods"><i class="fa fa-table"></i></span></td> </tr> </tbody> </table> </div> </div> <br> <h3 class="banner-blue" id="expression_conservation">Expression Context Conservation (<abbr title="Click to show help" href="/help/ecc" data-target="#helpModal">ECC</abbr>)</h3> <div class="table-responsive"> <table class="table table-striped table-separated" id="ecc_hits_table"> <thead> <tr> <th data-sort="string-ins"><span class="sort-icon"></span>Target</th> <th data-sort="string-ins"><span class="sort-icon"></span>Alias</th> <th data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th data-sort="float"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/ecc" data-target="#helpModal">ECC</abbr> score</th> <th data-sort="string-ins"><span class="sort-icon"></span>Gene Family Method</th> <th>Actions</th> </tr> </thead> <tbody> <tr> <td><a href="/sequence/view/1366304" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/1366304">AT4G27400</a></td> <td><span class="text-muted">No alias</span></td> <td>Late embryogenesis abundant (LEA) protein-related</td> <td>0.01</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39258179" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/1372608" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/1372608">AT5G54370</a></td> <td><span class="text-muted">No alias</span></td> <td>Late embryogenesis abundant (LEA) protein-related</td> <td>0.02</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39258323" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/1373263" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/1373263">AT5G60530</a></td> <td><span class="text-muted">No alias</span></td> <td>late embryogenesis abundant protein-related / LEA protein-related</td> <td>0.01</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39258593" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/762963" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/762963">Aop_g32172</a></td> <td><span class="text-muted">No alias</span></td> <td>not classified & original description: none</td> <td>0.04</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39259983" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/790677" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/790677">Aop_g59886</a></td> <td><span class="text-muted">No alias</span></td> <td>not classified & original description: none</td> <td>0.01</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39260013" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/2154175" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/2154175">Aspi01Gene00014.t1</a></td> <td>Aspi01Gene00014</td> <td>not classified & original description: none</td> <td>0.01</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39260147" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/2164458" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/2164458">Aspi01Gene10490.t1</a></td> <td>Aspi01Gene10490</td> <td>not classified & original description: none</td> <td>0.01</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39260229" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/2206016" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/2206016">Aspi01Gene52912.t1</a></td> <td>Aspi01Gene52912</td> <td>not classified & original description: none</td> <td>0.01</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39260347" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/2212388" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/2212388">Aspi01Gene59477.t1</a></td> <td>Aspi01Gene59477</td> <td>not classified & original description: none</td> <td>0.01</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39260407" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/2350933" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/2350933">Ceric.10G068800.1</a></td> <td>Ceric.10G068800</td> <td>not classified & original description: pacid=50613531...</td> <td>0.02</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39260612" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/2367949" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/2367949">Ceric.26G032000.1</a></td> <td>Ceric.26G032000</td> <td>not classified & original description: pacid=50599460...</td> <td>0.01</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39260614" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/2367952" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/2367952">Ceric.26G032300.1</a></td> <td>Ceric.26G032300</td> <td>not classified & original description: pacid=50600130...</td> <td>0.02</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39260616" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/2131451" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/2131451">Dcu_g29247</a></td> <td><span class="text-muted">No alias</span></td> <td>not classified & original description: none</td> <td>0.02</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39260618" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/2134014" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/2134014">Dcu_g31810</a></td> <td><span class="text-muted">No alias</span></td> <td>not classified & original description: none</td> <td>0.02</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39260620" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/1729189" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/1729189">GSVIVT01005843001</a></td> <td><span class="text-muted">No alias</span></td> <td><span class="text-muted">No description available</span></td> <td>0.01</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39260622" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/1729190" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/1729190">GSVIVT01005845001</a></td> <td><span class="text-muted">No alias</span></td> <td><span class="text-muted">No description available</span></td> <td>0.02</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39260624" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/1434734" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/1434734">Gb_08582</a></td> <td><span class="text-muted">No alias</span></td> <td>no hits & (original description: none)</td> <td>0.02</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39260626" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/1633098" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/1633098">LOC_Os01g73710.1</a></td> <td>LOC_Os01g73710</td> <td>no hits & (original description: none)</td> <td>0.01</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39260628" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/1571255" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/1571255">MA_10430750g0010</a></td> <td><span class="text-muted">No alias</span></td> <td>no hits & (original description: none)</td> <td>0.02</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39260630" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/1574796" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/1574796">MA_10434352g0010</a></td> <td><span class="text-muted">No alias</span></td> <td>no hits & (original description: none)</td> <td>0.02</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39260632" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/1621408" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/1621408">MA_8955g0010</a></td> <td><span class="text-muted">No alias</span></td> <td>no hits & (original description: none)</td> <td>0.02</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39260634" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/1510316" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/1510316">Mp1g11810.1</a></td> <td><span class="text-muted">No alias</span></td> <td>no hits & (original description: none)</td> <td>0.02</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39260636" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/1698511" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/1698511">Solyc02g078930.3.1</a></td> <td>Solyc02g078930</td> <td>no hits & (original description: none)</td> <td>0.01</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39260638" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2398248/58/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> </tbody> </table> </div> <br> <h3 class="banner-blue" id="annotation">Functional Annotation</h3> <div class="panel with-nav-tabs panel-default"> <div class="panel-heading"> <ul class="nav nav-tabs"> <li class="active"><a href="#tab1default" data-toggle="tab">GO</a></li> <li><a href="#tab2default" data-toggle="tab">Predicted GO</a></li> <li><a href="#tab3default" data-toggle="tab">InterPro</a></li> </ul> </div> <div> <div class="tab-content"> <div class="tab-pane fade in active" id="tab1default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr> <td class="col-xs-12"><p>No GO annotation available for this sequence</p></td> </tr> </tbody> </table> </div> <div class="panel-body"> <a href="#" id="go_toggle">Toggle parental</a> </div> </div> <div class="tab-pane fade" id="tab2default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="predicted_go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr> <td class="col-xs-12"><p>No Predicted GO terms available for this sequence</p></td> </tr> </tbody> </table> </div> </div> <div class="tab-pane fade" id="tab3default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="interpro_table"> <thead> <tr> <th class="col-xs-3" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/interpro_domain" data-target="#helpModal">InterPro domains</abbr></th> <th class="col-xs-5" data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Start</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Stop</th> </tr> </thead> <tbody> <tr> <td class="col-xs-3"><a href="/interpro/view/8247">IPR009646</a></td> <td class="col-xs-5">Root_cap</td> <td class="col-xs-2">194</td> <td class="col-xs-2">248</td> </tr> </tbody> </table> </div> </div> </div> </div> </div> <div class="row"> <div class="col-lg-12 col-md-12 col-sm-12"> <div class="panel panel-default"> <div class="panel-heading" id="links">External Links</div> <div class="table-responsive"> <table class="table table-striped table-separated"> <tbody> <tr> <td><em>No external refs found!</em></td> </td> </tr> </tbody> </table> </div> </div> </div> </div> <div class="modal" id="profileModal" tabindex="-1" role="dialog" aria-labelledby="profileModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> </div> </div> </div> <footer class="footer" id="footer"> <div class="container"> <div class="row"> <div class="col-xs-2"><strong class="text-muted"><a href="/features" class="text-muted">CoNekT</a></strong></div> <div class="col-xs-2"><a href="/about" class="text-muted">About</a></div> <div class="col-xs-2"><a href="/contact" class="text-muted">Contact</a></div> <div class="col-xs-2"><a href="/disclaimer" 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