Azfi_s0205.g057731

Description : mRNA helicase *(RH31) & original description: CDS=150-1823

Gene families : OG0001618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001618_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0205.g057731

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00107p00082420	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AT5G08620	ATRH25, STRS2	DEA(D/H)-box RNA helicase family protein	0.03	OrthoFinder output from all 47 species
Aev_g18916	No alias	mRNA helicase *(RH31) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc12g056340.2.1	Solyc12g056340	Probable DEAD-box ATP-dependent RNA helicase 48...	0.05	OrthoFinder output from all 47 species
Zm00001e016261_P001	Zm00001e016261	DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	342	440
IPR011545	DEAD/DEAH_box_helicase_dom	113	288

External Links

No external refs found!