1. Home
  2. Species
  3. Azolla filiculoides
  4. Sequence
  5. Azfi_s0205.g057726

Azfi_s0205.g057726 (APUM2, PUM2)


Aliases : APUM2, PUM2

Description : not classified & original description: CDS=300-3455


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0205.g057726

Target Alias Description ECC score Gene Family Method Actions
AT2G29190 APUM2, PUM2 pumilio 2 0.03 OrthoFinder output from all 47 species
Ala_g16848 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61802 PUM1, APUM1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g61874 APUM4, PUM4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.18G068300.1 APUM2, PUM2,... not classified & original description: pacid=50621207... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001065.14 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001065.15 PUM5, APUM5 No description available 0.03 OrthoFinder output from all 47 species
Dcu_g48916 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os05g01910.1 PUM1, APUM1,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Lfl_g08945 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08859 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c16_13520V3.1 Pp3c16_13520 pumilio 2 0.02 OrthoFinder output from all 47 species
Zm00001e027653_P001 PUM1, APUM1,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e029661_P001 APUM2, PUM2,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR012940 NABP 361 714
IPR001313 Pumilio_RNA-bd_rpt 903 934
IPR001313 Pumilio_RNA-bd_rpt 792 825
IPR001313 Pumilio_RNA-bd_rpt 720 754
IPR001313 Pumilio_RNA-bd_rpt 864 899
IPR001313 Pumilio_RNA-bd_rpt 983 1012
IPR001313 Pumilio_RNA-bd_rpt 756 789
IPR001313 Pumilio_RNA-bd_rpt 937 971
IPR001313 Pumilio_RNA-bd_rpt 835 859
No external refs found!