Azfi_s0179.g056277 (RAD23D)

Aliases : RAD23D

Description : ubiquitin-proteasome shuttle factor *(RAD23) & original description: CDS=207-1280

Gene families : OG0001068 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001068_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0179.g056277
Cluster	HCCA: Cluster_32

Target	Alias	Description	ECC score	Gene Family Method
Adi_g123403	RAD23D	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Ala_g04123	RAD23A	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Aob_g24550	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01031048001	RAD23-3, RAD23C	Ubiquitin receptor RAD23c OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
LOC_Os02g08300.1	RAD23B, RAD23,...	shuttle protein (RAD23)	0.02	OrthoFinder output from all 47 species
Ore_g27319	RAD23-3, RAD23C	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003684	damaged DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006289	nucleotide-excision repair	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006354	DNA-templated transcription elongation	IEP	HCCA
BP	GO:0006368	transcription elongation by RNA polymerase II	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
CC	GO:0008023	transcription elongation factor complex	IEP	HCCA
MF	GO:0015299	obsolete solute:proton antiporter activity	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
CC	GO:0016593	Cdc73/Paf1 complex	IEP	HCCA
MF	GO:0017056	structural constituent of nuclear pore	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015940	UBA	312	348
IPR015940	UBA	122	159
IPR015360	XPC-bd	230	286
IPR000626	Ubiquitin-like_dom	3	76

External Links

No external refs found!

Azfi_s0179.g056277 (RAD23D)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation