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  5. Azfi_s0178.g056166

Azfi_s0178.g056166


Description : platform ATPase CDC48 & original description: CDS=301-2751


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0178.g056166
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00117380 evm_27.TU.AmTr_v1... Cell division control protein 48 homolog D... 0.04 OrthoFinder output from all 47 species
Aev_g04868 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
Als_g14973 No alias platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g02580 CDC48B platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67891 CDC48A, CDC48, ATCDC48 platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Cre06.g269950 No alias Cell division control protein 48 homolog E... 0.03 OrthoFinder output from all 47 species
MA_10168585g0010 No alias platform ATPase (CDC48) 0.03 OrthoFinder output from all 47 species
MA_10429450g0010 No alias Cell division control protein 48 homolog D... 0.02 OrthoFinder output from all 47 species
Mp1g02450.1 No alias platform ATPase (CDC48) 0.02 OrthoFinder output from all 47 species
Msp_g06020 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03860 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55150 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g069720.2.1 Solyc11g069720 platform ATPase (CDC48) 0.03 OrthoFinder output from all 47 species
Spa_g39328 No alias platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53868 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g55989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012761_P001 Zm00001e012761 platform ATPase (CDC48) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR004201 Cdc48_dom2 135 197
IPR015415 Vps4_C 725 767
IPR003338 CDC4_N-term_subdom 33 114
IPR041569 AAA_lid_3 400 441
IPR041569 AAA_lid_3 676 718
IPR003959 ATPase_AAA_core 248 377
IPR003959 ATPase_AAA_core 521 654
No external refs found!