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  5. Azfi_s0173.g055770

Azfi_s0173.g055770 (PUB12, AtPUB12)


Aliases : PUB12, AtPUB12

Description : not classified & original description: CDS=1-435


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0173.g055770

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene36180.t1 Aspi01Gene36180 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0030.g024386 No alias not classified & original description: CDS=1-501 0.06 OrthoFinder output from all 47 species
Azfi_s0070.g036784 PUB13, ATPUB13 not classified & original description: CDS=1-531 0.07 OrthoFinder output from all 47 species
Cre03.g178550 No alias Dynein assembly factor with WDR repeat domains 1... 0.02 OrthoFinder output from all 47 species
Pir_g00381 ATPUB17, PUB17 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006525 arginine metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
MF GO:0009015 N-succinylarginine dihydrolase activity IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
MF GO:0015562 efflux transmembrane transporter activity IEP HCCA
MF GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 60 96
IPR000225 Armadillo 18 56
No external refs found!