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  5. Azfi_s0170.g055609

Azfi_s0170.g055609 (SNX1, ATSNX1)


Aliases : SNX1, ATSNX1

Description : regulatory factor SNX1 of Retromer protein recycling complex & original description: CDS=118-1332


Gene families : OG0003446 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003446_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0170.g055609

Target Alias Description ECC score Gene Family Method Actions
Pir_g13412 SNX1, ATSNX1 regulatory factor SNX1 of Retromer protein recycling... 0.03 OrthoFinder output from all 47 species
Spa_g08198 SNX1, ATSNX1 regulatory factor SNX1 of Retromer protein recycling... 0.03 OrthoFinder output from all 47 species
Zm00001e028676_P001 SNX1, ATSNX1,... component SNX1 of Retromer protein recycling complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0035091 phosphatidylinositol binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003852 2-isopropylmalate synthase activity IEP HCCA
CC GO:0005666 RNA polymerase III complex IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
BP GO:0006551 leucine metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009081 branched-chain amino acid metabolic process IEP HCCA
BP GO:0009082 branched-chain amino acid biosynthetic process IEP HCCA
BP GO:0009098 leucine biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
MF GO:0031491 nucleosome binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001683 PX_dom 92 173
IPR015404 Vps5_C 203 432
No external refs found!