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  5. Azfi_s0167.g054554

Azfi_s0167.g054554 (RNA_POL_II_LSRNA_POL_I...)


Aliases : RNA_POL_II_LSRNA_POL_II_LS, NRPB1, RPB1, RNA_POL_II_LS

Description : component *(NRPB1) of RNA polymerase II complex & original description: CDS=500-5746


Gene families : OG0003577 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003577_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0167.g054554

Target Alias Description ECC score Gene Family Method Actions
Aop_g00820 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.15 RNA_POL_II_LSRNA_... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
GSVIVT01008740001 RNA_POL_II_LSRNA_... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.04 OrthoFinder output from all 47 species
Gb_33197 RNA_POL_II_LSRNA_... subunit 1 of Pol II RNA polymerase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
BP GO:0006366 transcription by RNA polymerase II IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007066 RNA_pol_Rpb1_3 438 601
IPR007080 RNA_pol_Rpb1_1 32 264
IPR007081 RNA_pol_Rpb1_5 739 1328
IPR007075 RNA_pol_Rpb1_6 805 989
IPR007073 RNA_pol_Rpb1_7 1074 1207
IPR000722 RNA_pol_asu 266 434
IPR007083 RNA_pol_Rpb1_4 632 732
IPR000684 RNA_pol_II_repeat_euk 1512 1525
IPR000684 RNA_pol_II_repeat_euk 1554 1567
IPR000684 RNA_pol_II_repeat_euk 1701 1714
IPR000684 RNA_pol_II_repeat_euk 1547 1560
IPR000684 RNA_pol_II_repeat_euk 1491 1504
IPR000684 RNA_pol_II_repeat_euk 1533 1546
IPR000684 RNA_pol_II_repeat_euk 1568 1581
IPR000684 RNA_pol_II_repeat_euk 1519 1532
IPR000684 RNA_pol_II_repeat_euk 1526 1539
IPR000684 RNA_pol_II_repeat_euk 1540 1553
IPR000684 RNA_pol_II_repeat_euk 1477 1490
IPR000684 RNA_pol_II_repeat_euk 1463 1476
IPR000684 RNA_pol_II_repeat_euk 1610 1623
IPR000684 RNA_pol_II_repeat_euk 1638 1651
IPR000684 RNA_pol_II_repeat_euk 1582 1595
IPR000684 RNA_pol_II_repeat_euk 1688 1700
IPR000684 RNA_pol_II_repeat_euk 1596 1609
IPR000684 RNA_pol_II_repeat_euk 1505 1518
IPR000684 RNA_pol_II_repeat_euk 1624 1637
No external refs found!