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  5. Azfi_s0167.g054487

Azfi_s0167.g054487


Description : not classified & original description: CDS=178-870


Gene families : OG0002581 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002581_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0167.g054487
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT3G49180 RID3 Transducin/WD40 repeat-like superfamily protein 0.04 OrthoFinder output from all 47 species
Cre06.g251350 RID3 Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01009478001 RID3 Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_10613 RID3 pre-40S ribosomal subunit assembly factor (RID3) 0.03 OrthoFinder output from all 47 species
Lfl_g08660 RID3 pre-40S ribosomal subunit assembly factor *(RID3) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 64 96
No external refs found!