Azfi_s0158.g053866 (ATRABA2A, ATRAB11C,...)

Aliases : ATRABA2A, ATRAB11C, ATRAB-A2A, RAB-A2A, RAB11c

Description : A-class RAB GTPase & original description: CDS=282-950

Gene families : OG0000247 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000247_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0158.g053866
Cluster	HCCA: Cluster_27

Target	Alias	Description	ECC score	Gene Family Method
AT1G07410	RABA2b,...	RAB GTPase homolog A2B	0.03	OrthoFinder output from all 47 species
AT1G18200	AtRABA6b, RABA6b	RAB GTPase homolog A6B	0.05	OrthoFinder output from all 47 species
AT1G28550	RABA1i, AtRABA1i	RAB GTPase homolog A1I	0.06	OrthoFinder output from all 47 species
AT1G73640	RABA6a, AtRABA6a	RAB GTPase homolog A6A	0.03	OrthoFinder output from all 47 species
AT2G33870	ArRABA1h	RAB GTPase homolog A1H	0.06	OrthoFinder output from all 47 species
AT3G15060	AtRABA1g, RABA1g	RAB GTPase homolog A1G	0.02	OrthoFinder output from all 47 species
Adi_g025558	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g077470	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g04605	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g75310	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020961.97	AtRABA1e, RABA1e	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
Cre03.g189250	ATRABA2A,...	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
Dac_g01462	ATRABA2A,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g44511	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g00471	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os05g01480.1	ATRABA2A,...	A-class RAB GTPase	0.04	OrthoFinder output from all 47 species
Len_g15896	ATRABA2A,...	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Len_g16053	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
MA_18685g0010	AtRABA5d, RABA5d	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Nbi_g04633	RABA2b,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g05911	ATRABA2A,...	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g08711	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0224.g026297	AtRABA1f, RABA1f	A-class RAB GTPase & original description: CDS=308-952	0.03	OrthoFinder output from all 47 species
Sam_g27740	No alias	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Solyc03g118820.4.1	RABA6a,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Solyc09g056340.3.1	AtRABA5b,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Solyc12g014080.2.1	AtRABA1f,...	A-class RAB GTPase	0.01	OrthoFinder output from all 47 species
Zm00001e003625_P001	ATRABA5C, ARA4,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Zm00001e020213_P001	AtRABA1f,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Zm00001e030680_P001	ATHSGBP, RABA1d,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Zm00001e033825_P001	AtRABA1f,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005543	phospholipid binding	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
MF	GO:0032182	ubiquitin-like protein binding	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
MF	GO:0043130	ubiquitin binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	18	178

External Links

No external refs found!

Azfi_s0158.g053866 (ATRABA2A, ATRAB11C,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation