Azfi_s0156.g053712

Description : MRM1-type rRNA methyltransferase & original description: CDS=1-2229

Gene families : OG0006766 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006766_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0156.g053712
Cluster	HCCA: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method
AT2G19870	No alias	tRNA/rRNA methyltransferase (SpoU) family protein	0.03	OrthoFinder output from all 47 species
Aop_g18699	No alias	MRM1-type rRNA methyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Cre13.g566150	No alias	No description available	0.02	OrthoFinder output from all 47 species
GSVIVT01015302001	No alias	No description available	0.07	OrthoFinder output from all 47 species
LOC_Os01g53890.1	LOC_Os01g53890	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
MF	GO:0008173	RNA methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
MF	GO:0008658	penicillin binding	IEP	HCCA
MF	GO:0031406	carboxylic acid binding	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA
MF	GO:0033293	monocarboxylic acid binding	IEP	HCCA
MF	GO:0042802	identical protein binding	IEP	HCCA
MF	GO:0042803	protein homodimerization activity	IEP	HCCA
MF	GO:0043177	organic acid binding	IEP	HCCA
MF	GO:0051087	chaperone binding	IEP	HCCA
MF	GO:0060590	ATPase regulator activity	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
MF	GO:1901681	sulfur compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001537	SpoU_MeTrfase	531	655
IPR013123	SpoU_subst-bd	429	512

External Links

No external refs found!

Azfi_s0156.g053712

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation