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  5. Azfi_s0152.g053425

Azfi_s0152.g053425 (PWP2, ATPWP2)


Aliases : PWP2, ATPWP2

Description : SSU processome assembly factor *(UTP1/PWP2) & original description: CDS=1-2727


Gene families : OG0005463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005463_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0152.g053425

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00059990 PWP2, ATPWP2,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
AT1G15440 PWP2, ATPWP2 periodic tryptophan protein 2 0.04 OrthoFinder output from all 47 species
Aev_g07968 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.02 OrthoFinder output from all 47 species
Cre06.g254150 PWP2, ATPWP2 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Ehy_g10263 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.04 OrthoFinder output from all 47 species
LOC_Os05g44320.1 PWP2, ATPWP2,... SSU processome assembly factor (UTP1/PWP2) 0.02 OrthoFinder output from all 47 species
Mp1g17900.1 PWP2, ATPWP2 SSU processome assembly factor (UTP1/PWP2) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR007148 SSU_processome_Utp12 781 886
IPR001680 WD40_repeat 502 539
IPR001680 WD40_repeat 549 581
IPR001680 WD40_repeat 417 453
IPR001680 WD40_repeat 87 119
IPR001680 WD40_repeat 132 168
No external refs found!