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  5. Azfi_s0129.g048852

Azfi_s0129.g048852


Description : DNA bending architectural protein *(HMG-B) & original description: CDS=598-4089


Gene families : OG0000754 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000754_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0129.g048852
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Ala_g38399 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Als_g11304 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Als_g60258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g33519 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Ceric.05G094900.1 Ceric.05G094900 DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000851.35 No alias No description available 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004620 phospholipase activity IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
BP GO:0031179 peptide modification IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
MF GO:0050290 sphingomyelin phosphodiesterase D activity IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR001606 ARID_dom 783 866
IPR009071 HMG_box_dom 1011 1077
No external refs found!