Azfi_s0123.g048442

Description : not classified & original description: CDS=180-2516

Gene families : OG0005853 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005853_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0123.g048442

Target	Alias	Description	ECC score	Gene Family Method
Adi_g059251	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g15352	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g25755	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.13G087700.1	Ceric.13G087700	not classified & original description: pacid=50636878...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020943.85	No alias	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Dac_g46202	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g01929	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
LOC_Os04g43140.1	LOC_Os04g43140	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Mp5g03860.1	No alias	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Ppi_g63313	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g15235	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc09g090740.4.1	Solyc09g090740	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0004683	calmodulin-dependent protein kinase activity	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0043647	inositol phosphate metabolic process	IEP	HCCA
BP	GO:0046164	alcohol catabolic process	IEP	HCCA
BP	GO:0046174	polyol catabolic process	IEP	HCCA
BP	GO:0046838	phosphorylated carbohydrate dephosphorylation	IEP	HCCA
BP	GO:0046855	inositol phosphate dephosphorylation	IEP	HCCA
BP	GO:0071545	inositol phosphate catabolic process	IEP	HCCA
MF	GO:0140612	DNA damage sensor activity	IEP	HCCA
MF	GO:0140664	ATP-dependent DNA damage sensor activity	IEP	HCCA
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	501	608
IPR011545	DEAD/DEAH_box_helicase_dom	221	434

External Links

No external refs found!