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  5. Azfi_s0117.g046489

Azfi_s0117.g046489


Description : CAMTA-type transcription factor & original description: CDS=200-2893


Gene families : OG0000648 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000648_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0117.g046489
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00173360 CAMTA3, SR1,... RNA biosynthesis.transcriptional activation.CAMTA... 0.04 OrthoFinder output from all 47 species
Aob_g03586 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11078 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G055700.1 CAMTA3, SR1,... CAMTA-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.24G013800.1 CAMTA3, SR1,... CAMTA-type transcription factor & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.31G019600.1 Ceric.31G019600 CAMTA-type transcription factor & original description:... 0.06 OrthoFinder output from all 47 species
LOC_Os01g69910.1 LOC_Os01g69910 transcription factor (CAMTA) 0.04 OrthoFinder output from all 47 species
LOC_Os07g30774.1 LOC_Os07g30774 transcription factor (CAMTA) 0.04 OrthoFinder output from all 47 species
Ore_g17074 No alias CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g35915 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g11905 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010659 No alias CAMTA-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Sam_g07183 No alias CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g057270.4.1 CAMTA3, SR1,... transcription factor (CAMTA) 0.03 OrthoFinder output from all 47 species
Solyc01g105230.4.1 Solyc01g105230 transcription factor (CAMTA) 0.03 OrthoFinder output from all 47 species
Tin_g21019 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e002794_P002 CAMTA3, SR1,... transcription factor (CAMTA) 0.03 OrthoFinder output from all 47 species
Zm00001e008367_P002 Zm00001e008367 transcription factor (CAMTA) 0.05 OrthoFinder output from all 47 species
Zm00001e012888_P005 CAMTA3, SR1,... transcription factor (CAMTA) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
InterPro domains Description Start Stop
IPR005559 CG-1_dom 22 135
IPR000048 IQ_motif_EF-hand-BS 805 825
IPR000048 IQ_motif_EF-hand-BS 783 801
IPR002909 IPT_dom 364 449
IPR002110 Ankyrin_rpt 556 631
No external refs found!