Azfi_s0116.g046374 (CYL2, ATDPB2, DPB2)

Aliases : CYL2, ATDPB2, DPB2

Description : non-catalytic component *(Dpb2) of DNA polymerase epsilon complex & original description: CDS=97-1779

Gene families : OG0007445 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007445_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0116.g046374

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00151000	CYL2, ATDPB2,...	Cell cycle.interphase.DNA replication.elongation.DNA...	0.05	OrthoFinder output from all 47 species
AT5G22110	CYL2, ATDPB2, DPB2	DNA polymerase epsilon subunit B2	0.05	OrthoFinder output from all 47 species
Als_g31667	CYL2, ATDPB2, DPB2	non-catalytic component *(Dpb2) of DNA polymerase...	0.05	OrthoFinder output from all 47 species
Aop_g06660	CYL2, ATDPB2, DPB2	non-catalytic component *(Dpb2) of DNA polymerase...	0.06	OrthoFinder output from all 47 species
Aspi01Gene71983.t1	CYL2, ATDPB2,...	non-catalytic component *(Dpb2) of DNA polymerase...	0.03	OrthoFinder output from all 47 species
Ceric.33G019600.1	CYL2, ATDPB2,...	non-catalytic component *(Dpb2) of DNA polymerase...	0.11	OrthoFinder output from all 47 species
Cre10.g424200	CYL2, ATDPB2, DPB2	Cell cycle.interphase.DNA replication.elongation.DNA...	0.06	OrthoFinder output from all 47 species
Dcu_g13380	CYL2, ATDPB2, DPB2	non-catalytic component *(Dpb2) of DNA polymerase...	0.11	OrthoFinder output from all 47 species
GSVIVT01008158001	CYL2, ATDPB2, DPB2	Cell cycle.interphase.DNA replication.elongation.DNA...	0.11	OrthoFinder output from all 47 species
LOC_Os05g06840.1	CYL2, ATDPB2,...	non-catalytic component Dpb2 of DNA polymerase epsilon complex	0.07	OrthoFinder output from all 47 species
Len_g59791	CYL2, ATDPB2, DPB2	non-catalytic component *(Dpb2) of DNA polymerase...	0.08	OrthoFinder output from all 47 species
MA_715573g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Msp_g38493	CYL2, ATDPB2, DPB2	non-catalytic component *(Dpb2) of DNA polymerase...	0.04	OrthoFinder output from all 47 species
Ppi_g11131	CYL2, ATDPB2, DPB2	non-catalytic component *(Dpb2) of DNA polymerase...	0.04	OrthoFinder output from all 47 species
Sam_g37738	No alias	non-catalytic component *(Dpb2) of DNA polymerase...	0.04	OrthoFinder output from all 47 species
Smo111965	CYL2, ATDPB2, DPB2	Cell cycle.interphase.DNA replication.elongation.DNA...	0.02	OrthoFinder output from all 47 species
Spa_g12762	CYL2, ATDPB2, DPB2	non-catalytic component *(Dpb2) of DNA polymerase...	0.04	OrthoFinder output from all 47 species
Zm00001e003768_P001	CYL2, ATDPB2,...	non-catalytic component Dpb2 of DNA polymerase epsilon complex	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004146	dihydrofolate reductase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	HCCA
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	HCCA
BP	GO:0010639	negative regulation of organelle organization	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	HCCA
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0032392	DNA geometric change	IEP	HCCA
BP	GO:0032508	DNA duplex unwinding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032780	negative regulation of ATP-dependent activity	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	HCCA
CC	GO:0042555	MCM complex	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0043086	negative regulation of catalytic activity	IEP	HCCA
BP	GO:0043462	regulation of ATP-dependent activity	IEP	HCCA
BP	GO:0044092	negative regulation of molecular function	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0046653	tetrahydrofolate metabolic process	IEP	HCCA
BP	GO:0046654	tetrahydrofolate biosynthetic process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0051095	regulation of helicase activity	IEP	HCCA
BP	GO:0051097	negative regulation of helicase activity	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051129	negative regulation of cellular component organization	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:1905462	regulation of DNA duplex unwinding	IEP	HCCA
BP	GO:1905463	negative regulation of DNA duplex unwinding	IEP	HCCA
BP	GO:1905774	regulation of DNA helicase activity	IEP	HCCA
BP	GO:1905775	negative regulation of DNA helicase activity	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA
BP	GO:2001251	negative regulation of chromosome organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007185	DNA_pol_a/d/e_bsu	318	521

External Links

No external refs found!

Azfi_s0116.g046374 (CYL2, ATDPB2, DPB2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation