AMTR_s00145p00090170 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00145.34

Description : DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda


Gene families : OG_01_0001479 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001479_tree ,
OG_02_0001081 (LandPlants) Phylogenetic Tree(s): OG_02_0001081_tree ,
OG_03_0001102 (SeedPlants) Phylogenetic Tree(s): OG_03_0001102_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00145p00090170
Cluster HCCA: Cluster_391

Target Alias Description ECC score Gene Family Method Actions
ATCG00190 RPOB RNA polymerase subunit beta 0.11 Archaeplastida
Gb_02251 No alias RpoB core component plastid-encoded RNA polymerase 0.03 Archaeplastida
Gb_06830 No alias DNA-directed RNA polymerase subunit beta OS=Pinus... 0.03 Archaeplastida
Gb_09029 No alias DNA-directed RNA polymerase subunit beta OS=Cycas... 0.02 Archaeplastida
LOC_Os04g16820.1 No alias RpoB core component plastid-encoded RNA polymerase 0.03 Archaeplastida
LOC_Os05g22830.1 No alias DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.02 Archaeplastida
LOC_Os05g22860.1 No alias DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.08 Archaeplastida
Mp1g13170.1 No alias DNA-directed RNA polymerase subunit beta OS=Marchantia... 0.03 Archaeplastida
Mp6g01430.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp6g21490.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc00g500053.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.06 Archaeplastida
Solyc01g095950.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.06 Archaeplastida
Solyc02g067590.2.1 No alias DNA-directed RNA polymerase subunit beta OS=Liriodendron... 0.05 Archaeplastida
Solyc10g017920.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.05 Archaeplastida
Solyc12g035790.2.1 No alias regulatory component YCF2 of AAA-ATPase motor complex 0.05 Archaeplastida
Solyc12g035870.3.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.05 Archaeplastida
Zm00001e042040_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e042070_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e042106_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e042170_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
ATCG00190 RPOB RNA polymerase subunit beta 0.11 LandPlants
Gb_02251 No alias RpoB core component plastid-encoded RNA polymerase 0.03 LandPlants
Gb_06830 No alias DNA-directed RNA polymerase subunit beta OS=Pinus... 0.03 LandPlants
Gb_09029 No alias DNA-directed RNA polymerase subunit beta OS=Cycas... 0.02 LandPlants
LOC_Os04g16820.1 No alias RpoB core component plastid-encoded RNA polymerase 0.02 LandPlants
LOC_Os05g22830.1 No alias DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.02 LandPlants
LOC_Os05g22860.1 No alias DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.08 LandPlants
Mp1g13170.1 No alias DNA-directed RNA polymerase subunit beta OS=Marchantia... 0.03 LandPlants
Mp6g01430.1 No alias no hits & (original description: none) 0.03 LandPlants
Mp6g21490.1 No alias no hits & (original description: none) 0.03 LandPlants
Solyc00g500053.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.06 LandPlants
Solyc01g095950.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.06 LandPlants
Solyc02g067590.2.1 No alias DNA-directed RNA polymerase subunit beta OS=Liriodendron... 0.05 LandPlants
Solyc10g017920.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.05 LandPlants
Solyc12g035870.3.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.05 LandPlants
Zm00001e042040_P001 No alias no hits & (original description: none) 0.02 LandPlants
Zm00001e042070_P001 No alias no hits & (original description: none) 0.03 LandPlants
Zm00001e042106_P001 No alias no hits & (original description: none) 0.03 LandPlants
Zm00001e042170_P001 No alias no hits & (original description: none) 0.05 LandPlants
ATCG00190 RPOB RNA polymerase subunit beta 0.12 SeedPlants
Gb_02251 No alias RpoB core component plastid-encoded RNA polymerase 0.03 SeedPlants
Gb_06830 No alias DNA-directed RNA polymerase subunit beta OS=Pinus... 0.03 SeedPlants
Gb_09029 No alias DNA-directed RNA polymerase subunit beta OS=Cycas... 0.02 SeedPlants
LOC_Os04g16820.1 No alias RpoB core component plastid-encoded RNA polymerase 0.02 SeedPlants
LOC_Os05g22830.1 No alias DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.02 SeedPlants
LOC_Os05g22860.1 No alias DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.09 SeedPlants
Solyc00g500053.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.05 SeedPlants
Solyc01g095950.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.05 SeedPlants
Solyc02g067590.2.1 No alias DNA-directed RNA polymerase subunit beta OS=Liriodendron... 0.04 SeedPlants
Solyc10g017920.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.04 SeedPlants
Solyc12g035790.2.1 No alias regulatory component YCF2 of AAA-ATPase motor complex 0.04 SeedPlants
Solyc12g035870.3.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.04 SeedPlants
Zm00001e042040_P001 No alias no hits & (original description: none) 0.02 SeedPlants
Zm00001e042070_P001 No alias no hits & (original description: none) 0.02 SeedPlants
Zm00001e042106_P001 No alias no hits & (original description: none) 0.02 SeedPlants
Zm00001e042170_P001 No alias no hits & (original description: none) 0.05 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007120 DNA-dir_RNAP_su2_dom 3 139
IPR007641 RNA_pol_Rpb2_7 142 187
No external refs found!