Azfi_s0109.g045433 (NRPD5, ATRPABC24.3,...)


Aliases : NRPD5, ATRPABC24.3, NRPB5, RPB5A

Description : not classified & original description: CDS=263-967


Gene families : OG0003853 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003853_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0109.g045433

Target Alias Description ECC score Gene Family Method Actions
AT5G57980 RPB5C RNA polymerase II fifth largest subunit, C 0.02 OrthoFinder output from all 47 species
Ala_g15567 NRPD5,... component *(NRPE5) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Cre09.g403219 NRPD5,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
Spa_g00199 NRPD5,... component *(NRPE5) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
InterPro domains Description Start Stop
IPR005571 RNA_pol_Rpb5_N 32 111
IPR000783 RNA_pol_subH/Rpb5_C 155 226
No external refs found!