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  5. Azfi_s0107.g045108

Azfi_s0107.g045108


Description : mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP trafficking complex & original description: CDS=1-561


Gene families : OG0000667 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000667_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0107.g045108

Target Alias Description ECC score Gene Family Method Actions
AT5G37720 ALY4 ALWAYS EARLY 4 0.03 OrthoFinder output from all 47 species
Aob_g04122 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000194.40 No alias RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder output from all 47 species
LOC_Os06g14470.1 ALY4, LOC_Os06g14470 mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.02 OrthoFinder output from all 47 species
LOC_Os08g33120.1 ALY4, LOC_Os08g33120 mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
MA_4147g0010 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
Pir_g05319 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
Pnu_g16813 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
Sam_g50870 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
Solyc04g014460.4.1 ALY4, Solyc04g014460 mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.04 OrthoFinder output from all 47 species
Solyc10g086400.2.1 Solyc10g086400 mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
Solyc11g073280.2.1 Solyc11g073280 mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
Zm00001e001243_P001 Zm00001e001243 mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006448 regulation of translational elongation IEP HCCA
BP GO:0006449 regulation of translational termination IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
MF GO:0016872 intramolecular lyase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034250 positive regulation of amide metabolic process IEP HCCA
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043244 regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0045901 positive regulation of translational elongation IEP HCCA
BP GO:0045905 positive regulation of translational termination IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR025715 FoP_C 135 180
IPR000504 RRM_dom 37 105
No external refs found!