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  5. Ehy_g03991

Ehy_g03991


Description : pre-60S ribosomal subunit assembly factor *(NOP4) & original description: none


Gene families : OG0005318 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005318_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g03991

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00226160 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT2G21440 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.06 OrthoFinder output from all 47 species
Adi_g050354 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.05 OrthoFinder output from all 47 species
Als_g33867 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.05 OrthoFinder output from all 47 species
Aob_g14659 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.02 OrthoFinder output from all 47 species
Aop_g68936 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.02 OrthoFinder output from all 47 species
Azfi_s1017.g095259 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.02 OrthoFinder output from all 47 species
Ceric.10G020200.1 Ceric.10G020200 pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.75 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre02.g104650 No alias No description available 0.04 OrthoFinder output from all 47 species
Dcu_g16260 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.02 OrthoFinder output from all 47 species
LOC_Os03g58720.1 LOC_Os03g58720 pre-60S ribosomal subunit assembly factor (NOP4) 0.05 OrthoFinder output from all 47 species
LOC_Os03g60930.1 LOC_Os03g60930 pre-60S ribosomal subunit assembly factor (NOP4) 0.04 OrthoFinder output from all 47 species
Mp7g13580.1 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.03 OrthoFinder output from all 47 species
Msp_g13408 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.02 OrthoFinder output from all 47 species
Ore_g36856 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.02 OrthoFinder output from all 47 species
Pir_g18515 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000812 No alias EC_2.4 glycosyltransferase & original description: CDS=1-3129 0.03 OrthoFinder output from all 47 species
Sam_g36528 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.03 OrthoFinder output from all 47 species
Solyc01g109990.4.1 Solyc01g109990 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Spa_g08758 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.05 OrthoFinder output from all 47 species
Tin_g27533 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 281 349
IPR000504 RRM_dom 670 740
IPR000504 RRM_dom 18 88
IPR000504 RRM_dom 516 577
No external refs found!