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  5. Azfi_s0102.g044568

Azfi_s0102.g044568 (HTA6)


Aliases : HTA6

Description : histone *(H2A) & original description: CDS=1-438


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0102.g044568

Target Alias Description ECC score Gene Family Method Actions
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.04 OrthoFinder output from all 47 species
Adi_g005118 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g16641 HTA6 histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g54113 HTA7 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene05349.t1 HTA6, Aspi01Gene05349 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene06356.t1 HTA6, Aspi01Gene06356 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene26194.t1 HTA6, Aspi01Gene26194 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07967 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G032900.1 HTA7, Ceric.09G032900 histone *(H2A) & original description: pacid=50587494... 0.03 OrthoFinder output from all 47 species
Ceric.25G035000.1 HTA7, Ceric.25G035000 histone *(H2A) & original description: pacid=50593123... 0.03 OrthoFinder output from all 47 species
Ceric.28G045900.1 GAMMA-H2AX,... histone *(H2A) & original description: pacid=50570258... 0.03 OrthoFinder output from all 47 species
Dac_g06100 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10226 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g05493 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17428 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g26088 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g37716 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10425800g0010 HTA7 histone (H2A) 0.03 OrthoFinder output from all 47 species
Nbi_g11307 HTA10 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g18514 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g40966 HTA2 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g42735 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08324 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c10_13610V3.1 GAMMA-H2AX,... gamma histone variant H2AX 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0225.g026322 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: CDS=44-520 0.03 OrthoFinder output from all 47 species
Smo166626 RAT5, HTA1, ATHTA1 Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
Smo170948 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from all 47 species
Smo73637 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder output from all 47 species
Tin_g04849 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12865 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012144_P001 GAMMA-H2AX,... histone (H2A) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 97 130
IPR007125 Histone_H2A/H2B/H3 17 94
No external refs found!