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  5. Ehy_g03955

Ehy_g03955


Description : not classified & original description: none


Gene families : OG0007936 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007936_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g03955
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
Ala_g06970 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0168.g054578 No alias not classified & original description: CDS=199-2913 0.03 OrthoFinder output from all 47 species
Cba_g04055 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os09g29790.1 LOC_Os09g29790 Pentatricopeptide repeat-containing protein At1g76280... 0.03 OrthoFinder output from all 47 species
Mp7g13850.1 No alias Pentatricopeptide repeat-containing protein At1g76280... 0.02 OrthoFinder output from all 47 species
Ore_g42388 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g082320.3.1 Solyc04g082320 Pentatricopeptide repeat-containing protein At1g76280... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 461 517
IPR002885 Pentatricopeptide_repeat 760 820
IPR002885 Pentatricopeptide_repeat 671 700
IPR002885 Pentatricopeptide_repeat 171 189
IPR002885 Pentatricopeptide_repeat 544 588
IPR002885 Pentatricopeptide_repeat 702 749
No external refs found!