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  5. Azfi_s0093.g043334

Azfi_s0093.g043334


Description : not classified & original description: CDS=1-2907


Gene families : OG0001699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001699_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0093.g043334
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene32988.t1 Aspi01Gene32988 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16189 SNM1, ATSNM1 interstrand crosslink repair factor *(SNM) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g14932 SNM1, ATSNM1 interstrand crosslink repair factor *(SNM) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01000444001 No alias DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os01g57440.1 LOC_Os01g57440 DNA cross-link repair protein SNM1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Lfl_g08761 SNM1, ATSNM1 interstrand crosslink repair factor *(SNM) & original... 0.03 OrthoFinder output from all 47 species
MA_31065g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp1g24430.1 No alias DNA cross-link repair protein SNM1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Msp_g12976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR011084 DRMBL 840 943
IPR001279 Metallo-B-lactamas 659 777
IPR001660 SAM 497 552
No external refs found!