Azfi_s0087.g042358 (ATRECQ4A, ATSGS1, RECQ4A)

Aliases : ATRECQ4A, ATSGS1, RECQ4A

Description : helicase component *(RecQ4A) of RTR Holliday junction dissolution complex & original description: CDS=414-4304

Gene families : OG0000844 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0087.g042358

Target	Alias	Description	ECC score	Gene Family Method
Als_g14650	ATRECQ4A, ATSGS1, RECQ4A	helicase component *(RecQ4A) of RTR Holliday junction...	0.03	OrthoFinder output from all 47 species
Ceric.34G005600.1	RECQI1, Ceric.34G005600	not classified & original description: pacid=50623064...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000615.26	RecQl3, ATRECQ3	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020848.31	RecQl3, ATRECQ3	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
GSVIVT01023325001	ATRECQ4A, ATSGS1, RECQ4A	Cell cycle.mitosis and meiosis.meiotic...	0.06	OrthoFinder output from all 47 species
Gb_08699	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.07	OrthoFinder output from all 47 species
LOC_Os04g35420.1	ATRECQ4A,...	helicase component RecQ4A of RTR Holliday junction...	0.03	OrthoFinder output from all 47 species
Len_g14718	ATRECQ4A, ATSGS1, RECQ4A	helicase component *(RecQ4A) of RTR Holliday junction...	0.06	OrthoFinder output from all 47 species
Len_g56734	RECQI1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g16228	ATRECQ4A, ATSGS1, RECQ4A	helicase component *(RecQ4A) of RTR Holliday junction...	0.03	OrthoFinder output from all 47 species
MA_10435954g0010	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_10436537g0010	ATRECQ4A, ATSGS1, RECQ4A	helicase component RecQ4A of RTR Holliday junction...	0.05	OrthoFinder output from all 47 species
Msp_g21318	ATRECQ4A, ATSGS1, RECQ4A	helicase component *(RecQ4A) of RTR Holliday junction...	0.04	OrthoFinder output from all 47 species
Msp_g27927	RECQI1	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Solyc01g100280.4.1	RECQI1, Solyc01g100280	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.07	OrthoFinder output from all 47 species
Solyc01g103960.3.1	ATRECQ4A,...	helicase component RecQ4A of RTR Holliday junction...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003678	DNA helicase activity	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043138	3'-5' DNA helicase activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005680	anaphase-promoting complex	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
MF	GO:0031267	small GTPase binding	IEP	HCCA
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	718	823
IPR011545	DEAD/DEAH_box_helicase_dom	512	679
IPR032284	RecQ_Zn-bd	835	917
IPR002121	HRDC_dom	1083	1149
IPR018982	RQC_domain	925	1040

External Links

No external refs found!

Azfi_s0087.g042358 (ATRECQ4A, ATSGS1, RECQ4A)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation