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  5. Azfi_s0087.g042281

Azfi_s0087.g042281


Description : component *(bL28c) of large plastid ribosomal-subunit proteome & original description: CDS=125-508


Gene families : OG0006464 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006464_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0087.g042281
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT2G33450 No alias Ribosomal L28 family 0.13 OrthoFinder output from all 47 species
Adi_g107767 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ala_g05691 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Als_g54254 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aob_g09499 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aop_g69998 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ceric.06G041500.1 Ceric.06G041500 component *(bL28c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Cre06.g265800 No alias Protein biosynthesis.organelle translation... 0.11 OrthoFinder output from all 47 species
Dac_g00398 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Dcu_g05058 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Dde_g27683 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Ehy_g00252 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
GSVIVT01027870001 No alias Protein biosynthesis.organelle translation... 0.08 OrthoFinder output from all 47 species
Gb_39628 No alias component psRPL28 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
LOC_Os05g01110.1 LOC_Os05g01110 component psRPL28 of large ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Len_g11369 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
MA_10426581g0010 No alias component psRPL28 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Mp4g05120.1 No alias component psRPL28 of large ribosomal subunit proteome 0.14 OrthoFinder output from all 47 species
Ore_g11040 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ore_g11041 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Pir_g58585 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Pp3c5_28500V3.1 Pp3c5_28500 Ribosomal L28 family 0.03 OrthoFinder output from all 47 species
Pp3c6_1140V3.1 Pp3c6_1140 Ribosomal L28 family 0.01 OrthoFinder output from all 47 species
Sam_g23667 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Solyc09g090410.3.1 Solyc09g090410 component psRPL28 of large ribosomal subunit proteome 0.12 OrthoFinder output from all 47 species
Tin_g00322 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Zm00001e004728_P001 Zm00001e004728 component psRPL28 of large ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Zm00001e012787_P001 Zm00001e012787 component psRPL28 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0005986 sucrose biosynthetic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016872 intramolecular lyase activity IEP HCCA
MF GO:0019203 carbohydrate phosphatase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
MF GO:0050307 sucrose-phosphate phosphatase activity IEP HCCA
MF GO:0050308 sugar-phosphatase activity IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0060590 ATPase regulator activity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR026569 Ribo_L28/L24 52 109
No external refs found!