1. Home
  2. Species
  3. Azolla filiculoides
  4. Sequence
  5. Azfi_s0078.g038143

Azfi_s0078.g038143


Description : core component *(NHP2) of H/ACA snoRNP RNA pseudouridylation complex & original description: CDS=144-605


Gene families : OG0004004 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004004_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0078.g038143
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AT5G08180 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.06 OrthoFinder output from all 47 species
Als_g00450 No alias core component *(NHP2) of H/ACA snoRNP RNA... 0.03 OrthoFinder output from all 47 species
Cre16.g690500 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
GSVIVT01008187001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.06 OrthoFinder output from all 47 species
LOC_Os06g16290.1 LOC_Os06g16290 protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.05 OrthoFinder output from all 47 species
Lfl_g04516 No alias core component *(NHP2) of H/ACA snoRNP RNA... 0.04 OrthoFinder output from all 47 species
MA_99460g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 OrthoFinder output from all 47 species
Solyc12g038980.2.1 Solyc12g038980 protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 OrthoFinder output from all 47 species
Zm00001e023454_P001 Zm00001e023454 protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 37 122
No external refs found!