Azfi_s0076.g037831

Description : assembly factor involved in ITS1 rRNA removal *(BRIX1) & original description: CDS=156-1130

Gene families : OG0005675 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005675_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0076.g037831
Cluster	HCCA: Cluster_74

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00215770	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
AT1G52930	No alias	Ribosomal RNA processing Brix domain protein	0.03	OrthoFinder output from all 47 species
Adi_g045878	No alias	assembly factor involved in ITS1 rRNA removal *(BRIX1) &...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001206.16	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Mp4g04670.1	No alias	BRX1 assembly factor involved in ITS1 rRNA removal	0.03	OrthoFinder output from all 47 species
Sam_g14955	No alias	assembly factor involved in ITS1 rRNA removal *(BRIX1) &...	0.02	OrthoFinder output from all 47 species
Smo66840	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Zm00001e014980_P002	Zm00001e014980	BRX1 assembly factor involved in ITS1 rRNA removal	0.02	OrthoFinder output from all 47 species
Zm00001e022842_P003	Zm00001e022842	BRX1 assembly factor involved in ITS1 rRNA removal	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	HCCA
MF	GO:0004668	protein-arginine deiminase activity	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
BP	GO:0006576	biogenic amine metabolic process	IEP	HCCA
BP	GO:0006595	polyamine metabolic process	IEP	HCCA
BP	GO:0006596	polyamine biosynthetic process	IEP	HCCA
BP	GO:0006869	lipid transport	IEP	HCCA
BP	GO:0009308	amine metabolic process	IEP	HCCA
BP	GO:0009309	amine biosynthetic process	IEP	HCCA
BP	GO:0009445	putrescine metabolic process	IEP	HCCA
BP	GO:0009446	putrescine biosynthetic process	IEP	HCCA
BP	GO:0015850	organic hydroxy compound transport	IEP	HCCA
BP	GO:0015918	sterol transport	IEP	HCCA
MF	GO:0016813	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0032365	intracellular lipid transport	IEP	HCCA
BP	GO:0032366	intracellular sterol transport	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042401	biogenic amine biosynthetic process	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007109	Brix	74	259

External Links

No external refs found!