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  5. Azfi_s0076.g037820

Azfi_s0076.g037820 (RNR1, ATMTRNASEII, EMB2730)


Aliases : RNR1, ATMTRNASEII, EMB2730

Description : exoribonuclease *(RNase R) & original description: CDS=121-2559


Gene families : OG0003116 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003116_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0076.g037820

Target Alias Description ECC score Gene Family Method Actions
Adi_g010538 RNR1,... exoribonuclease *(RNase R) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g06373 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16173 RNR1,... exoribonuclease *(RNase R) & original description: none 0.08 OrthoFinder output from all 47 species
Ceric.12G013800.1 RNR1,... exoribonuclease *(RNase R) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.16G035800.1 RNR1,... exoribonuclease *(RNase R) & original description:... 0.05 OrthoFinder output from all 47 species
Dde_g23634 RNR1,... exoribonuclease *(RNase R) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g42353 RNR1,... exoribonuclease *(RNase R) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01034161001 RNR1,... RNA processing.organelle machineries.ribonuclease... 0.05 OrthoFinder output from all 47 species
Gb_33852 RNR1,... exoribonuclease (RNase R) 0.04 OrthoFinder output from all 47 species
Gb_33853 RNR1,... exoribonuclease (RNase R) 0.04 OrthoFinder output from all 47 species
LOC_Os01g62440.1 RNR1,... exoribonuclease (RNase R) 0.06 OrthoFinder output from all 47 species
Len_g09802 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02157 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10437077g0010 RNR1,... exoribonuclease (RNase R) 0.05 OrthoFinder output from all 47 species
Mp3g07060.1 RNR1,... exoribonuclease (RNase R) 0.05 OrthoFinder output from all 47 species
Nbi_g16036 RNR1,... exoribonuclease *(RNase R) & original description: none 0.04 OrthoFinder output from all 47 species
Smo145357 RNR1,... RNA processing.organelle machineries.ribonuclease... 0.05 OrthoFinder output from all 47 species
Solyc09g010870.4.1 RNR1,... exoribonuclease (RNase R) 0.05 OrthoFinder output from all 47 species
Spa_g26797 RNR1,... exoribonuclease *(RNase R) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e019318_P002 RNR1,... exoribonuclease (RNase R) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004540 ribonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004820 glycine-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006426 glycyl-tRNA aminoacylation IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
InterPro domains Description Start Stop
IPR001900 RNase_II/R 403 705
No external refs found!