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  5. Azfi_s0076.g037780

Azfi_s0076.g037780


Description : not classified & original description: CDS=1-1272


Gene families : OG0000627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0076.g037780
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AT3G52980 No alias Zinc finger (CCCH-type) family protein / RNA recognition... 0.02 OrthoFinder output from all 47 species
Azfi_s0004.g008616 No alias not classified & original description: CDS=390-1862 0.05 OrthoFinder output from all 47 species
Ceric.26G049200.1 Ceric.26G049200 not classified & original description: pacid=50600373... 0.03 OrthoFinder output from all 47 species
Dcu_g19340 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51674 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07818 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01001467001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
GSVIVT01037782001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
LOC_Os03g21140.1 LOC_Os03g21140 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os07g48410.1 LOC_Os07g48410 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os11g03220.1 LOC_Os11g03220 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
MA_479847g0010 No alias C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Ore_g31565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005782 No alias not classified & original description: CDS=1-2136 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0181.g024872 No alias not classified & original description: CDS=482-2332 0.03 OrthoFinder output from all 47 species
Tin_g05643 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e020869_P004 Zm00001e020869 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e024022_P001 Zm00001e024022 C3H zinc finger transcription factor 0.05 OrthoFinder output from all 47 species
Zm00001e035876_P001 Zm00001e035876 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e039148_P001 Zm00001e039148 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005384 manganese ion transmembrane transporter activity IEP HCCA
BP GO:0006873 cellular monoatomic ion homeostasis IEP HCCA
BP GO:0006875 cellular metal ion homeostasis IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
BP GO:0030003 cellular monoatomic cation homeostasis IEP HCCA
BP GO:0030026 cellular manganese ion homeostasis IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0046916 cellular transition metal ion homeostasis IEP HCCA
BP GO:0048878 chemical homeostasis IEP HCCA
BP GO:0050801 monoatomic ion homeostasis IEP HCCA
BP GO:0055065 metal ion homeostasis IEP HCCA
BP GO:0055071 manganese ion homeostasis IEP HCCA
BP GO:0055076 transition metal ion homeostasis IEP HCCA
BP GO:0055080 monoatomic cation homeostasis IEP HCCA
BP GO:0055082 cellular chemical homeostasis IEP HCCA
BP GO:0098771 inorganic ion homeostasis IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 63 116
No external refs found!