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  5. Azfi_s0072.g037014

Azfi_s0072.g037014


Description : component *(eS10) of small ribosomal-subunit (SSU) proteome & original description: CDS=210-974


Gene families : OG0001341 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001341_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0072.g037014

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00250710 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
AT4G25740 No alias RNA binding Plectin/S10 domain-containing protein 0.04 OrthoFinder output from all 47 species
AT5G41520 No alias RNA binding Plectin/S10 domain-containing protein 0.07 OrthoFinder output from all 47 species
AT5G52650 No alias RNA binding Plectin/S10 domain-containing protein 0.04 OrthoFinder output from all 47 species
Adi_g025624 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g25175 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aop_g37205 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0034.g025251 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Cba_g24522 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.11G066500.1 Ceric.11G066500 component *(eS10) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.23G017600.1 Ceric.23G017600 component *(eS10) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001164.5 No alias 40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
GSVIVT01019409001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Gb_10517 No alias component RPS10 of SSU proteome 0.04 OrthoFinder output from all 47 species
Gb_10518 No alias component RPS10 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os01g73160.1 LOC_Os01g73160 component RPS10 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os04g35090.1 LOC_Os04g35090 component RPS10 of SSU proteome 0.04 OrthoFinder output from all 47 species
Lfl_g00341 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
MA_111018g0010 No alias component RPS10 of SSU proteome 0.05 OrthoFinder output from all 47 species
Mp2g00580.1 No alias component RPS10 of SSU proteome 0.03 OrthoFinder output from all 47 species
Msp_g16642 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pp3c14_1810V3.1 Pp3c14_1810 RNA binding Plectin/S10 domain-containing protein 0.04 OrthoFinder output from all 47 species
Pp3c23_13100V3.1 Pp3c23_13100 RNA binding Plectin/S10 domain-containing protein 0.03 OrthoFinder output from all 47 species
Pp3c24_2340V3.1 Pp3c24_2340 RNA binding Plectin/S10 domain-containing protein 0.03 OrthoFinder output from all 47 species
Sam_g12896 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Sam_g14221 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Sam_g15298 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g30478 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Smo37555 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Tin_g02351 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Tin_g22537 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e008107_P001 Zm00001e008107 component RPS10 of SSU proteome 0.05 OrthoFinder output from all 47 species
Zm00001e028280_P001 Zm00001e028280 component RPS10 of SSU proteome 0.06 OrthoFinder output from all 47 species
Zm00001e040881_P001 Zm00001e040881 component RPS10 of SSU proteome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0000491 small nucleolar ribonucleoprotein complex assembly IEP HCCA
BP GO:0000492 box C/D snoRNP assembly IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004549 tRNA-specific ribonuclease activity IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP HCCA
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR005326 S10_plectin_N 87 166
No external refs found!