Azfi_s0068.g036403

Description : RNA helicase *(Brr2) & original description: CDS=166-5640

Gene families : OG0001175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001175_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0068.g036403

Target	Alias	Description	ECC score	Gene Family Method
Ala_g14557	No alias	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.1Z263400.1	Ceric.1Z263400	RNA helicase *(Brr2) & original description:...	0.03	OrthoFinder output from all 47 species
Ehy_g12876	emb1507	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01010769001	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.03	OrthoFinder output from all 47 species
LOC_Os03g11470.1	LOC_Os03g11470	DExH-box ATP-dependent RNA helicase DExH14...	0.02	OrthoFinder output from all 47 species
Lfl_g09106	No alias	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc06g069480.3.1	Solyc06g069480	DExH-box ATP-dependent RNA helicase DExH14...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	1080	1158
IPR001650	Helicase_C	462	607
IPR001650	Helicase_C	1263	1356
IPR011545	DEAD/DEAH_box_helicase_dom	232	405
IPR004179	Sec63-dom	729	1003
IPR004179	Sec63-dom	1486	1765

External Links

No external refs found!