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  5. Ehy_g03671

Ehy_g03671


Description : assembly factor involved in RuBisCo assembly *(RAF1) & original description: none


Gene families : OG0006523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g03671

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00163120 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Aev_g05322 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene33663.t1 Aspi01Gene33663 assembly factor involved in RuBisCo assembly *(RAF1) &... 0.04 OrthoFinder output from all 47 species
Azfi_s0004.g008439 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.04 OrthoFinder output from all 47 species
Dde_g00790 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.05 OrthoFinder output from all 47 species
Len_g10651 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.03 OrthoFinder output from all 47 species
MA_184421g0020 No alias RAF1 assembly factor involved in RuBisCo assembly 0.03 OrthoFinder output from all 47 species
Mp1g20960.1 No alias RAF1 assembly factor involved in RuBisCo assembly 0.02 OrthoFinder output from all 47 species
Nbi_g09141 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.03 OrthoFinder output from all 47 species
Ore_g05484 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.05 OrthoFinder output from all 47 species
Pnu_g06513 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.05 OrthoFinder output from all 47 species
Spa_g04323 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.04 OrthoFinder output from all 47 species
Tin_g09553 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004014 adenosylmethionine decarboxylase activity IEP HCCA
MF GO:0004618 phosphoglycerate kinase activity IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006597 spermine biosynthetic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0008215 spermine metabolic process IEP HCCA
BP GO:0008216 spermidine metabolic process IEP HCCA
BP GO:0008295 spermidine biosynthetic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
InterPro domains Description Start Stop
IPR041358 Raf1_N 170 277
IPR040858 Raf1_C 295 442
IPR040781 Raf1_HTH 99 157
No external refs found!