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  5. Azfi_s0061.g034932

Azfi_s0061.g034932


Description : scaffold component *(Nop56) of snoRNP rRNA methylation complex & original description: CDS=163-1848


Gene families : OG0004657 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004657_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0061.g034932
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AT1G56110 NOP56 homolog of nucleolar protein NOP56 0.03 OrthoFinder output from all 47 species
Adi_g050304 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Aop_g11428 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001073.20 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.04 OrthoFinder output from all 47 species
Cre12.g525200 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.04 OrthoFinder output from all 47 species
Ehy_g06884 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
LOC_Os03g22880.1 NOP56, LOC_Os03g22880 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.03 OrthoFinder output from all 47 species
Len_g11157 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
MA_9961528g0010 NOP56 Probable nucleolar protein 5-1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp2g23840.1 NOP56 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.07 OrthoFinder output from all 47 species
Msp_g11664 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0075.g017374 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Smo167367 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.03 OrthoFinder output from all 47 species
Zm00001e001676_P001 NOP56, Zm00001e001676 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.03 OrthoFinder output from all 47 species
Zm00001e038196_P002 NOP56, Zm00001e038196 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0043138 3'-5' DNA helicase activity IEP HCCA
InterPro domains Description Start Stop
IPR002687 Nop_dom 182 414
IPR012974 NOP58/56_N 9 74
No external refs found!