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  5. Azfi_s0055.g033936

Azfi_s0055.g033936 (WTF1, AtWTF1)


Aliases : WTF1, AtWTF1

Description : plastidial RNA basal splicing factor *(WTF1) & original description: CDS=1-1530


Gene families : OG0001240 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001240_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0055.g033936

Target Alias Description ECC score Gene Family Method Actions
AT5G62990 emb1692 Ubiquitin carboxyl-terminal hydrolase family protein 0.04 OrthoFinder output from all 47 species
Ala_g02152 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.03 OrthoFinder output from all 47 species
Ala_g12370 WTF1, AtWTF1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g15495 WTF1, AtWTF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g44157 WTF1, AtWTF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01027077001 WTF1, AtWTF1 RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
Gb_07993 WTF1, AtWTF1 WTF1 plastidial RNA basal splicing factor 0.03 OrthoFinder output from all 47 species
LOC_Os05g49610.1 WTF1, AtWTF1,... WTF1 plastidial RNA basal splicing factor 0.04 OrthoFinder output from all 47 species
Msp_g10885 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g04260 WTF1, AtWTF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10310 WTF1, AtWTF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004928 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012917 WTF1, AtWTF1 not classified & original description: CDS=1-1233 0.04 OrthoFinder output from all 47 species
Solyc01g079430.2.1 Solyc01g079430 Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc04g074280.1.1 Solyc04g074280 Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Spa_g07945 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e026570_P001 WTF1, AtWTF1,... WTF1 plastidial RNA basal splicing factor 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
InterPro domains Description Start Stop
IPR021099 PORR_domain 107 434
No external refs found!