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  5. Azfi_s0052.g031680

Azfi_s0052.g031680 (emb1138)


Aliases : emb1138

Description : group-II intron splicing RNA helicase *(RH3) & original description: CDS=204-2195


Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0052.g031680

Target Alias Description ECC score Gene Family Method Actions
AT3G22310 PMH1, ATRH9 putative mitochondrial RNA helicase 1 0.05 OrthoFinder output from all 47 species
AT5G62190 PRH75 DEAD box RNA helicase (PRH75) 0.04 OrthoFinder output from all 47 species
Ala_g10440 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.06 OrthoFinder output from all 47 species
Als_g14234 PRH75 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g02044 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Cba_g18561 PRH75 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.06G054800.1 emb1138, Ceric.06G054800 not classified & original description: pacid=50619432... 0.03 OrthoFinder output from all 47 species
Ceric.17G055300.1 emb1138, Ceric.17G055300 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Ceric.21G051700.1 emb1138, Ceric.21G051700 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01000821001 PMH2, ATRH53 RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
LOC_Os09g34910.1 PRH75, LOC_Os09g34910 DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
LOC_Os12g41715.1 PMH2, ATRH53,... RNA helicase (PMH) 0.03 OrthoFinder output from all 47 species
Lfl_g06681 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
MA_10206082g0010 PMH2, ATRH53 RNA helicase (PMH) 0.04 OrthoFinder output from all 47 species
Ore_g07399 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Pir_g05277 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Sam_g06711 No alias group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Smo99603 emb1138 DEAD-box ATP-dependent RNA helicase 3, chloroplastic... 0.03 OrthoFinder output from all 47 species
Solyc07g044760.3.1 PMH2, ATRH53,... RNA helicase (PMH) 0.05 OrthoFinder output from all 47 species
Zm00001e003219_P001 PMH2, ATRH53,... RNA helicase (PMH) 0.03 OrthoFinder output from all 47 species
Zm00001e011716_P001 emb1138, Zm00001e011716 RH3 plastidial RNA basal splicing factor 0.02 OrthoFinder output from all 47 species
Zm00001e018107_P001 PMH2, ATRH53,... RNA helicase (PMH) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 367 469
IPR012562 GUCT 556 635
IPR011545 DEAD/DEAH_box_helicase_dom 152 324
No external refs found!