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  5. Azfi_s0051.g031460

Azfi_s0051.g031460


Description : RNA helicase *(RCF1) & original description: CDS=143-4114


Gene families : OG0003781 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003781_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0051.g031460

Target Alias Description ECC score Gene Family Method Actions
AT1G20920 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from all 47 species
Cre16.g676400 No alias RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
GSVIVT01023849001 No alias DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc12g098700.1.1 Solyc12g098700 RNA helicase (Prp5) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 674 845
IPR001650 Helicase_C 883 991
No external refs found!