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  5. Azfi_s0045.g029801

Azfi_s0045.g029801


Description : lysine-rich arabinogalactan protein & original description: CDS=179-6016


Gene families : OG0001343 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001343_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0045.g029801

Target Alias Description ECC score Gene Family Method Actions
AT3G52250 No alias Duplicated homeodomain-like superfamily protein 0.04 OrthoFinder output from all 47 species
Ala_g11479 No alias component *(PWR) of HDA9-PWR deacetylation complex &... 0.04 OrthoFinder output from all 47 species
Ala_g19843 No alias component *(PWR) of HDA9-PWR deacetylation complex &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene21399.t1 Aspi01Gene21399 component *(PWR) of HDA9-PWR deacetylation complex &... 0.04 OrthoFinder output from all 47 species
Ceric.14G077400.1 Ceric.14G077400 component *(PWR) of HDA9-PWR deacetylation complex &... 0.03 OrthoFinder output from all 47 species
Ceric.38G019400.1 Ceric.38G019400 component *(PWR) of HDA9-PWR deacetylation complex &... 0.05 OrthoFinder output from all 47 species
Dac_g39968 No alias component *(PWR) of HDA9-PWR deacetylation complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g04157 No alias component *(PWR) of HDA9-PWR deacetylation complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g14249 No alias component *(PWR) of HDA9-PWR deacetylation complex &... 0.03 OrthoFinder output from all 47 species
Dde_g03515 No alias component *(PWR) of HDA9-PWR deacetylation complex &... 0.04 OrthoFinder output from all 47 species
GSVIVT01016309001 No alias Chromatin organisation.histone modifications.histone... 0.05 OrthoFinder output from all 47 species
LOC_Os05g03550.1 LOC_Os05g03550 component PWR of HDA9-PWR deacetylation complex 0.03 OrthoFinder output from all 47 species
Len_g59754 No alias component *(PWR) of HDA9-PWR deacetylation complex &... 0.03 OrthoFinder output from all 47 species
Lfl_g09069 No alias component *(PWR) of HDA9-PWR deacetylation complex &... 0.04 OrthoFinder output from all 47 species
MA_14319g0010 No alias component PWR of HDA9-PWR deacetylation complex 0.04 OrthoFinder output from all 47 species
MA_9049830g0010 No alias component PWR of HDA9-PWR deacetylation complex 0.04 OrthoFinder output from all 47 species
Mp1g21450.1 No alias component PWR of HDA9-PWR deacetylation complex 0.03 OrthoFinder output from all 47 species
Msp_g19128 No alias component *(PWR) of HDA9-PWR deacetylation complex &... 0.04 OrthoFinder output from all 47 species
Pir_g13639 No alias component *(PWR) of HDA9-PWR deacetylation complex &... 0.03 OrthoFinder output from all 47 species
Pir_g28594 No alias component *(PWR) of HDA9-PWR deacetylation complex &... 0.04 OrthoFinder output from all 47 species
Pp3c11_8790V3.1 Pp3c11_8790 Duplicated homeodomain-like superfamily protein 0.01 OrthoFinder output from all 47 species
Ppi_g13727 No alias component *(PWR) of HDA9-PWR deacetylation complex &... 0.04 OrthoFinder output from all 47 species
Sam_g08924 No alias component *(PWR) of HDA9-PWR deacetylation complex &... 0.04 OrthoFinder output from all 47 species
Solyc04g049120.4.1 Solyc04g049120 component PWR of HDA9-PWR deacetylation complex 0.04 OrthoFinder output from all 47 species
Zm00001e027573_P003 Zm00001e027573 component PWR of HDA9-PWR deacetylation complex 0.06 OrthoFinder output from all 47 species
Zm00001e029482_P006 Zm00001e029482 component PWR of HDA9-PWR deacetylation complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 1306 1347
No external refs found!